Package: EPLSIM 0.1.0
EPLSIM: Partial Linear Single Index Models for Environmental Mixture Analysis
Collection of ancillary functions and utilities for Partial Linear Single Index Models for Environmental mixture analyses, which currently provides functions for scalar outcomes. The outputs of these functions include the single index function, single index coefficients, partial linear coefficients, mixture overall effect, exposure main and interaction effects, and differences of quartile effects. In the future, we will add functions for binary, ordinal, Poisson, survival, and longitudinal outcomes, as well as models for time-dependent exposures. See Wang et al (2020) <doi:10.1186/s12940-020-00644-4> for an overview.
Authors:
EPLSIM_0.1.0.tar.gz
EPLSIM_0.1.0.zip(r-4.5)EPLSIM_0.1.0.zip(r-4.4)EPLSIM_0.1.0.zip(r-4.3)
EPLSIM_0.1.0.tgz(r-4.4-any)EPLSIM_0.1.0.tgz(r-4.3-any)
EPLSIM_0.1.0.tar.gz(r-4.5-noble)EPLSIM_0.1.0.tar.gz(r-4.4-noble)
EPLSIM_0.1.0.tgz(r-4.4-emscripten)EPLSIM_0.1.0.tgz(r-4.3-emscripten)
EPLSIM.pdf |EPLSIM.html✨
EPLSIM/json (API)
| # Install 'EPLSIM' in R: |
| install.packages('EPLSIM', repos = c('https://yuyanwangsixtwo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yuyanwangsixtwo/eplsim/issues
- nhanes - This is data from NHANES 2003–2004
- nhanes.new - This is updated data from original data based on NHANES 2003–2004 survey
Last updated 2 years agofrom:a7ae14c51e. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win | OK | Oct 27 2024 |
| R-4.5-linux | OK | Oct 27 2024 |
| R-4.4-win | OK | Oct 27 2024 |
| R-4.4-mac | OK | Oct 27 2024 |
| R-4.3-win | OK | Oct 27 2024 |
| R-4.3-mac | OK | Oct 27 2024 |
Exports:confounder.transe.interaction.plote.main.plotinterquartile.quartile.plotmixture.overall.plotplsi.lr.v1si.coef.plotsi.fun.plot
Dependencies:abindarmbootciToolsclicodacolorspacedplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclelme4magrittrMASSMatrixmgcvminqamunsellnlmenloptrpillarpkgconfigR6RColorBrewerRcppRcppEigenrlangscalessurvivaltibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Transformation for confounder vector Z | confounder.trans |
| plot interaction effect of two exposures | e.interaction.plot |
| plot single exposure's main effect | e.main.plot |
| plot interquartile effect of specific exposure based on quartile of other exposures | interquartile.quartile.plot |
| plot mixture's overall effect based on quantile of exposures | mixture.overall.plot |
| This is data from NHANES 2003–2004 | nhanes |
| This is updated data from original data based on NHANES 2003–2004 survey | nhanes.new |
| Partial linear single index linear regression for scalar outcome | plsi.lr.v1 |
| plot estimated single index coefficients | si.coef.plot |
| plot estimated single index function | si.fun.plot |
